Diagnosis-to-treatment trend
Target ≤30 daysMonthly median days · select a point for evidence
Internal Dashboard
Role-specific, governed operational measures.
Measures come from a shared governed service so that their definitions remain consistent across the platform.
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Diagnosis to treatmentMonthly median · days
Treatment interruptionsCause groups · unknown preserved
Late-stage presentationDistrict counts · small cells suppressed
Treatment statusSelected rolling cohort
Operational alertsConstraints requiring action
Sources needing attentionFreshness and failed/partial syncs
Capacity and patient supportSupply, accommodation and travel feeds
Related governed workspaces
Governed operational intelligence
Cancer Service Command Centre
A cross-platform view of access, care delivery, continuity, data trust, and the work that needs action now.
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Treatment status
Current documented pathway state
Stage distribution
FIGO stage at diagnosis, including unknown
Waiting-time histogram
Diagnosis-to-treatment intervals by band
Treatment interruptions
Documented cause groups; unknown retained
Facility attention heatmap
Contextual service completeness—not a staff ranking. Select any cell to inspect evidence.
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Operational priorities
Owned, reasoned alerts with closure conditions
Requests, decisions & responses
Capture work, route it to an owner, and receive an auditable response
Data trust & source health
Freshness is explicit; unavailable never appears as zero
Facility IT Workspace
Facility administration, technical health, connectors, users, API status, and operational logs
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Hospital Manager Workspace
Hospital statistics, workload, OPD/IPD activity, compliance risk, resource utilization, and flagged cases
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Facilities
Manage hospital and clinic sites connected to Tanzania Cancer Platform
User Management
Accounts, roles, and facility assignments
| Name | Role | Facility | Status | Last Login | Actions | |
|---|---|---|---|---|---|---|
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Roles & Permissions
Role definitions and granular permission assignments
Roles
Permission Matrix
API Management
External system credentials and connection settings
Data Sources
Source systems per facility with pull schedules
Ingestion Jobs
Data pull history, status, and record statistics
| Job | Source | Facility | Status | Trigger | Records | Invalid | Dups | Started | Actions |
|---|---|---|---|---|---|---|---|---|---|
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Connector Operations
Phase 2 connector registry, active schedules, mapping controls, error queues, and retries
Connectors
| Name | Facility | Type | Schedule | Status | Last Run |
|---|---|---|---|---|---|
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Connector Configurations
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Field Mappings
| Source Field | Canonical Target | Status | Version | Actions |
|---|---|---|---|---|
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Retry Queue
| Connector | Status | Scheduled | Attempt | Actions |
|---|---|---|---|---|
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Connector Error Queue
| Connector | Severity | Status | Code | Message | Last Seen | Actions |
|---|---|---|---|---|---|---|
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Upload Paper Data
Import CSV, Excel, JSON, or PDF records from paper-based systems
Drop files here or click to browse
CSV, Excel, JSON, PDF up to 50 MB
file.csv
Upload Requirements
REQUIRED FIELDS (Default)
patient_id
first_name / last_name
date_of_birth (dob)
diagnosis_code
first_name / last_name
date_of_birth (dob)
diagnosis_code
ACCEPTED FORMATS
.csv (UTF-8)
.xlsx / .xls
.json / FHIR Bundle
.pdf (OCR)
.xlsx / .xls
.json / FHIR Bundle
.pdf (OCR)
Integration & Source Health
Operational status of facility endpoints, source freshness, and incoming data quality
Facility API Status
Each configured source remains independently manageable and auditable.
| Source | Facility | Type | Status | Last successful sync | DQ | Connection |
|---|---|---|---|---|---|---|
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cBioPortal Study Preparation & Export
Assemble an approved dataset into a governed cBioPortal study package, then validate, approve and import it.
Controlled workflow: SELECT APPROVED DATA → PREPARE → BUILD → VALIDATE → INDEPENDENT APPROVAL → PUBLISH → IMPORT → VERIFY. The worker validates storage/exports/cbioportal/<study_id>_<version>/; checksums are recorded in manifest.json and validation evidence is retained with the export job. The visualization portal opens in a new tab because its security policy does not permit iframe embedding.
Prepare controlled study export
Only approved or published dataset versions in your permitted facility scope are available.
Privacy contract
Only research subject and sample identifiers enter study files. Names, phones, NIDA, MRNs, patient UUIDs, and exact residence are rejected by the builder and validator.
cBioPortal Export QueueEvery transition is preserved in an audit event.
| Study | Source dataset | Version | Status | Package & validation | Created | Approved by | Required next step / approver | Action |
|---|---|---|---|---|---|---|---|---|
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Identity Resolution / MPI
Deterministic and probabilistic candidates are reviewed without deleting source aliases.
Link establishes an auditable MPI relationship. Merge is a separate proposed → approved → applied action and can always be unmerged.
Propose non-destructive merge
MPI principle
The source patients remain aliases. An applied merge marks a duplicate MPI record as merged; it does not delete a patient, identifier, contact, address, or provenance record.
Identity candidate review
| Incoming identity | Candidate MPI | Deterministic | Probabilistic | Score | Class | Review | Action |
|---|---|---|---|---|---|---|---|
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Merge audit trail
| Survivor | Merged alias | Status | Reason | Action |
|---|---|---|---|---|
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Data Quality Workbench
A six-level operational workflow for schema, fields, consistency, records, pathways, and registry quality.
Issues requiring actionSelect a category to drill into its affected records.
| Level | Problem | Severity | Patient / case | Status | Detected |
|---|---|---|---|---|---|
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Terminology Service
Versioned dictionaries, synonyms, and mappings that normalize source language into governed concepts.
For example, “Ca Cx”, “CA cervix”, “Cervical Ca”, and “cervical carcinoma” resolve to the normalized ICD-10 concept C53.
Code systems
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Value sets
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Normalized concepts
| System | Version | Code | Concept | Synonyms / source expressions |
|---|---|---|---|---|
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Patient Longitudinal View
One clinically understandable history across screening, diagnosis, staging, treatment, and follow-up.
Patients
Search for a patient to open their timeline.
Select a patient to view the longitudinal record.
Cancer Surveillance
A dedicated registry and service-surveillance workspace with geographic facility drill-down.
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Level A — Registry Surveillance
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Level B — Health-service Surveillance
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Facility mapAggregate case volume only
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● Larger marker = more registered casesSelect a marker, then inspect its governed evidence and next action.
Stage distribution & data readiness
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FacilitiesLevel C — Geographic & Referral Performance
Districts
Referral pathways
Foundation & Governance
Phase 1 control plane for access, facility scoping, source-system governance, study phases, and research-ready configuration
Architecture Posture
What this layer governs before ETL, linkage, care gaps, and predictive services scale further
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Immediate Governance Actions
Items still requiring explicit research or operational approval
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URS Activation & Go-live Readiness
26 implementation foundations, three local configurations and three external decisions. Evidence must be independently approved before activation.
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| URS | Requirement | Readiness | Accountability / evidence | Next step |
|---|---|---|---|---|
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Governed Source Systems
Registry of upstream systems independent of facility-specific feeds
| System | Type | Mode | Scope | Status |
|---|---|---|---|---|
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Study Phases
Explicit intervention-period governance for before, during, and after implementation analyses
| Phase | Status | Start | End |
|---|---|---|---|
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Configuration Definitions
Versionable research and governance keys exposed through typed configuration rather than code hard-coding
| Key | Domain | Type | Scope |
|---|---|---|---|
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Pending Research Assumptions
Protocol decisions that must remain configurable until formally approved
| Code | Domain | Status | Config Key |
|---|---|---|---|
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Active Config Values
Current effective overrides applied by global, facility, role, or user scope
| Definition | Scope | Status | Version | Effective Start |
|---|---|---|---|---|
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Data Management Workspace
Governance, harmonization, quality, MPI review, approval, and governed export operations
Data Sources Registry & Ingestion MonitorHIS/EMR, REDCap, labs, pathology, radiology, DHIS2, CSV, registries, APIs
| Source | Type | Facility | Status | Jobs | Records |
|---|
Bulk Upload CenterPreview, validation, versioning, rollback
Workflow MonitorRaw immutable -> transformed review -> canonical update
| Batch | Source | Stage | Rows | Next action | Created |
|---|
Data Quality IndicatorsCompleteness, validity, consistency, uniqueness, timeliness, reconciliation
Mapping & TerminologyFHIR/OpenMRS to canonical CDR
Minimum Dataset CoverageCanonical cervical cancer contract status
| Domain | Coverage | Defined | Missing |
|---|
Duplicate Resolution / MPI Queue
| Patient A | Patient B | Score | Status |
|---|
Cleaning Approval Queue
| Object | Action | Priority | Status |
|---|
Metadata & Data Dictionary
| Field | Domain | Type | Required |
|---|
Export Governance
| Export | Type | Status | Rows |
|---|
Reusable Query LibraryReports, cohorts, datasets, exports
Population & Denominator Management
| Dataset | Geography | Year | Population |
|---|
Standard Population LibraryReference age weights for standardized rates
| Name | Version | Age Bands | Weight Sum |
|---|
Rate Calculations
Use denominator age bands with saved numerator queries for screening, diagnosis, referral, follow-up, and recurrence rate calculations.
| Run | Type | Rate (95% CI) | Standard | Status |
|---|
cervical cancer registryconfirmed and harmonized
facilitycurrent
datasetCDR + analytics marts
records 0
Overview
A fast read on the active cohort. Counts, distributions, data quality, models, and duplicate-risk indicators reflect current platform data.
Diagnosis volume trend
raw case count by month — not an incidence rateDataset composition
cohorts, datasets, modelsVariable missingness
profiled fieldsData quality readout
scientist-facing checksQuery & filter
Build a cohort visually. The platform stores JSON filter definitions and only executes whitelisted, parameterized queries.
Compiled query
safe previewSaved query catalog
CanReg-style reusable filtersQuery preview rows
Run a preview to inspect current rows.Data Management
Scientist-facing governance view for sandbox staging, dataset versions, variable readiness, duplicate discovery, and export safety.
Dataset readiness
versioned analytic assets| Dataset | Type | Rows | Status |
|---|
Variable quality
missingness and outliers| Variable | Domain | Missing | Outliers |
|---|
Sandbox artifacts
source data unchanged| Sandbox | Type | Rows | Status |
|---|
Duplicate candidates
review-only MPI signalsFrequency distributions
Cross-tabulate variables and save widgets for dashboards and reports.
Frequency table
click headers in exported viewDistribution
auto chartChart studio
Switch chart types, restyle outputs, and export report-ready visuals.
Cervical cancer analytic view
Report builder
Config-driven catalog for repeatable registry outputs, rates, pivots, and ML review reports.
Staging sandbox
Manipulate derived copies for analysis. Original clinical, CDR, and operational tables remain unchanged.
Sandbox setup
non-destructiveNo sandbox created in this session.
Sandbox artifacts
derived copies| Sandbox | Type | Rows | Status |
|---|
MPI duplicate scan
Identify possible same-patient records within one hospital or across accessible facilities using name, ID, DOB, mobile number, and facility.
Scan settings
review only, no merge| Run | Scope | Candidates | Status |
|---|
Candidate matches
review queueExport
Pick fields, header style, shape, and format. Governed exports still require approval where configured.
Fields
0 selectedOutput
Analytics & Intelligence Workspace
Cohorts, versioned datasets, variable review, feature engineering, explainable ML, and monitoring
Data Scientist Workbench
Sandbox transformations, design governed visual reports, and identify probable duplicate patients without changing source clinical records.
Protection modeNon-destructive
All staging actions create derived sandbox artifacts. Original patient, CDR, and operational records are not modified.
Safe Staging Sandbox
Sandbox ArtifactsDerived copies only
| Sandbox | Type | Rows | Status |
|---|
Cohort Builder
Default criteria include confirmed cervical cancer, screening/pathology linkage, diagnosis stage, referral dates, treatment dates, follow-up, and recurrence surveillance.
| Cohort | Patients | Status | Version |
|---|
Dataset Builder
Row count is computed from real (non-demo) canonical records matching this window — not a self-reported number. A second, independent reviewer must approve the dataset before it becomes available as a governed source (e.g. for cBioPortal export).
| Dataset | Type | Rows | Version | Status | Action |
|---|
Variable ExplorerDistributions, missingness, outliers
| Variable | Domain | Missing | Outliers |
|---|
Governed definitionsShared by reporting, research and ML
| Definition | Version | Uses |
|---|
Visual AnalyticsDownload-ready outputs
Model Registry & Monitoring
| Model | Target | Status | AUC | Drift |
|---|
Prediction ReviewExplainability stored with model version and scoring date
Filter Wizard & Variable Selection
Frequency & Pivot Tables
Backups & Restore
Encrypted recovery copies, governed restore testing, and retention readiness
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Encrypted backup history
| Created | File | Size | Protection |
|---|---|---|---|
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Audit Log
Immutable record of all user actions and system events
Exports up to 5,000 rows from your scope. Each export is recorded.
| Time | User | Action | Module | IP Address |
|---|---|---|---|---|
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Notification Settings
Configure email and SMS alerts for system events
Alert Templates
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SMS Provider Configuration
Provider credentials are set via server environment configuration, not through this form — nothing here can leak a secret to the browser, and there is nothing to save.
My Profile
Manage your account details and password
My Profile
Change Password
Multi-Factor Authentication
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Optional MFA prevents lockout risk. Backup codes are supported.
Scan this QR code
Use Google Authenticator or any compatible authenticator app, then enter the 6-digit code above.
User Guide
Task-based help for navigating, submitting requests, receiving decisions, and drilling into governed evidence
IT Admin Manual
Complete operational manual for technical administration, integrations, and support